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A PCRE internal error occured. This might be caused by a faulty plugin

This site documents the work evaluating technologies for transferring genomes to the CBSE-managed TCGA archive site. The plan for this evaluation site is as follows: * Setup a [[http://www.perfsonar.net|perfSONAR]] node at UCSC to monitor paths to TCGA-related destinations around the Internet. * Setup a testbed using the [[http://info.iet.unipi.it/~luigi/dummynet/|Dummynet]] tool that simulates queue and bandwidth limitations, delays, packet losses, and multipath effects. Additional reference information can be found at: * ESnet's [[http://fasterdata.es.net/|fasterdata]] site. * An interesting [[http://fasterdata.es.net/assets/fasterdata/Dart-tutorial.pdf|presentation]] on this site at the Internet2 Joint Techs conference in 2010 by Eli Dart of ESnet. * Pittsburgh Supercomputing Center's site on [[http://www.psc.edu/networking/projects/tcptune/|Enabling High Performance Data Transfers]]. * [[http://www.web100.org/|Web100 Project]] * Presentation on the [[http://www.es.net/assets/Uploads/20110201-dart-science-dmz.pdf|Science DMZ]] concept. The 3 tools we are planning the test are: ^ Tool ^ Installation ^ Results ^ | [[http://globus.org/toolkit/docs/3.2/gridftp/|GridFTP]] | [[GridFTPInstall|Installation]] | [[GridResults|Results]] | | [[http://monalisa.cern.ch/FDT/|Faster Data Transfer]] | [[FDTInstall|Installation]]| [[FDTResults|Results]] | | [[http://genome.ucsc.edu/admin/git.html|paraFetch]] | [[paraFetch|Installation]] | [[ParaResults|Results]] | Experiment Details: - [[ScenarioProposal| Scenario Proposal]] - [[Locations | Remote Locations]] - [[TcpTuning | TCP Tuning]] - **perfSonar Sites:** [[http://ndb1.internet2.edu/perfAdmin/directory.cgi|Directory]] ^ Sites ^ PerfSONAR ^ | Sequencing Center at Washington University, St Louis | [[WUperfSonar|Results]] | | Sequencing Center at Baylor College of Medicine, Houston | [[BCperfSonar|Results]]| | Broad Institute, Boston | [[BIperfSonar|Results]] | | University of North Carolina Sequencing Center | [[UNCperfSonar|Results]] | | University Of British Columbia Sequencing Center | [[UBCperfSonar|Results]] | **Data sites:** * [[http://hgdownload.cse.ucsc.edu/downloads.html|UCSC Genome data download page]] * [[ftp://hgdownload.cse.ucsc.edu/goldenPath/|FTP site:UCSC Genome data]] Related research: - [[http://portal.acm.org/citation.cfm?id=1592576|VL2: A Scalable and Flexible Data Center Network]] : [[VL2Notes|Notes]] - [[http://portal.acm.org/citation.cfm?id=956993.957002&coll=DL&dl=ACM&CFID=16657217&CFTOKEN=91943640|Web100: Extended TCP Instrumentation]]: [[Web100|Notes]] - [[http://research.microsoft.com/en-us/um/people/maheshba/papers/thesis.pdf|RELIABLE COMMUNICATION FOR DATACENTERS]]: [[DCNotes|Notes]] - [[http://nar.oxfordjournals.org/content/early/2011/01/25/nar.gkr009.full.pdf+html|Genome Compression]] : [[GCNotes|Notes]] - TCP Variants: * [[http://www4.ncsu.edu/~rhee/export/bitcp/cubic-paper.pdf|TCP Cubic Variant]]: [[Cubic|Notes]] * [[ftp://ftp.cs.arizona.edu/xkernel/Papers/vegas.ps|TCP Vegas]] : [[Vegas|Notes]] Other links: * [[http://www.dokuwiki.org/syntax|Wiki Syntax]]

start.1304727601.txt.gz · Last modified: 2011/05/07 00:20 by brad