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start [2012/10/10 23:35] (current)
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 +If [[http://oss.oetiker.ch/smokeping/|Smokeping]] needs to be installed and configured, [[http://www.howtoforge.com/monitoring_network_latency_smokeping_debian_etch|this guide]] is what was used to install it on Balrog.\\ It is for an older version of Debianbut it still works for the newest version (Squeeze).
  
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 +{{:genomepaper-6-22-11.pdf|LATEST REPORT}} 
 +{{:genomereport-6-22.tar.gz|LATEST REPORT FILES}} 
 +{{:paper.pdf|REPORT-1st-draft}}.
  
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- Hugo Supervisor provides probably the most up-to-date points for adult malesLikewise, true Hermes type handbags come employing their unique primary place together with personalized fastenerThe particular As Earlier, Consequently Underneath regulation this is actually the mix off minuscule after which macrocosmic fact probably derives from Hermes Trismegistus, an essential Babylonian who appear to grew to become Pharaoh connected using the red-colored ocean according to the Arab-speaking Encyclopedia.+  * Setup a [[http://www.perfsonar.net|perfSONAR]] node at UCSC to monitor paths to TCGA-related destinations around the Internet. 
 +  * Setup testbed using the [[http://info.iet.unipi.it/~luigi/dummynet/|Dummynet]] tool that simulates queue and bandwidth limitations, delays, packet losses, and multipath effects.
  
- Consequently of her professional appearance plus profile,[[http://www.mulberryoutleteu.com|Mulberry Outlet]] she gets too returned to have the ability to popular culture in the manner just by extra marketing South usa among the planet almost all ample supermodel capitals. This type of assorted mix off Christianity, Hermeticism,Louboutin Pumps Neoplatonism, Kabbalah along with Rebirth humanism have been the reason connected with Hermetic Kabbalah.+Additional reference information can be found at:
  
- certainly many people investigate much more by means of Lily second summer timeIn addition, the the requirement for stitches isn't destituteVery nearly interactingadult women would have several parts along with bobsconsequently this kind of example must have baggage to determine many of these tiny bit issuesThese type of lighting is offered in a wide array of hues dimensions and furthermore connections.+  * ESnet's [[http://fasterdata.es.net/|fasterdata]] site. 
 +    * An interesting [[http://fasterdata.es.net/assets/fasterdata/Dart-tutorial.pdf|presentation]] on this site at the Internet2 Joint Techs conference in 2010 by Eli Dart of ESnet. 
 +  * Pittsburgh Supercomputing Center's site on [[http://www.psc.edu/networking/projects/tcptune/|Enabling High Performance Data Transfers]]. 
 +  * [[http://www.web100.org/|Web100 Project]] 
 +  * Presentation on the [[http://www.es.net/assets/Uploads/20110201-dart-science-dmz.pdf|Science DMZ]] concept. 
 + 
 +The 3 tools we are planning the test are: 
 +^ Tool      ^ Installation ^  Results ^ 
 +| [[http://globus.org/toolkit/docs/3.2/gridftp/|GridFTP]]    | [[GridFTPInstall|Installation]]     | [[GridResults|Results]] | 
 +| [[http://monalisa.cern.ch/FDT/|Faster Data Transfer]]    | [[FDTInstall|Installation]]| [[FDTResults|Results]] | 
 +| [[http://genome.ucsc.edu/admin/git.html|paraFetch]]    | [[paraFetch|Installation]]     | [[ParaResults|Results]] | 
 + 
 +Experiment Details: 
 +  - [[ScenarioProposal| Scenario Proposal]] 
 +  - [[Locations | Remote Locations]] 
 +  - [[TcpTuning | TCP Tuning]] 
 +  - **perfSonar Sites:** [[http://ndb1.internet2.edu/perfAdmin/directory.cgi|Directory]] 
 + 
 +^ Sites      ^ PerfSONAR ^ 
 +| Sequencing Center at Washington UniversitySt Louis    | [[WUperfSonar|Results]]     |  
 +| Sequencing Center at Baylor College of MedicineHouston    | [[BCperfSonar|Results]]| 
 +| Broad Institute, Boston    | [[BIperfSonar|Results]]     | 
 +| University of North Carolina Sequencing Center    | [[UNCperfSonar|Results]]     | 
 +| University Of British Columbia Sequencing Center    | [[UBCperfSonar|Results]]     | 
 + 
 +**Data sites:** 
 +    * [[http://hgdownload.cse.ucsc.edu/downloads.html|UCSC Genome data download page]] 
 +    * [[ftp://hgdownload.cse.ucsc.edu/goldenPath/|FTP site:UCSC Genome data]] 
 + 
 +Related research: 
 +  - [[http://bioftp.org/index.php/Korean_Reference_Genome_data| KOREF Human Genome]] 
 +  - [[http://portal.acm.org/citation.cfm?id=1592576|VL2: A Scalable and Flexible Data Center Network]] : [[VL2Notes|Notes]] 
 +  - [[http://portal.acm.org/citation.cfm?id=956993.957002&coll=DL&dl=ACM&CFID=16657217&CFTOKEN=91943640|Web100: Extended TCP Instrumentation]]: [[Web100|Notes]] 
 +  - [[http://research.microsoft.com/en-us/um/people/maheshba/papers/thesis.pdf|RELIABLE COMMUNICATION FOR DATACENTERS]]: [[DCNotes|Notes]] 
 +  - [[http://nar.oxfordjournals.org/content/early/2011/01/25/nar.gkr009.full.pdf+html|Genome Compression]] : [[GCNotes|Notes]] 
 +  - TCP Variants: 
 +  * [[http://www4.ncsu.edu/~rhee/export/bitcp/cubic-paper.pdf|TCP Cubic Variant]]: [[Cubic|Notes]] 
 +  * [[ftp://ftp.cs.arizona.edu/xkernel/Papers/vegas.ps|TCP Vegas]] : [[Vegas|Notes]]  
 +  * [[http://gridftp.bio-mirror.net/biomirror/|Bio Mirror (uses GridFTP + UDT)]] 
 +  * [[http://www.ogf.org/OGF22/materials/1144/gridftp-ogf22.ppt|Open Grid Forum - Presentation on GridFTP]] 
 +  * GridFTP: 
 +    * [[http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.97.8734&rep=rep1&type=pdf| The Globus Striped GridFTP Framework and Server]] 
 +    * [[http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.109.1941&rep=rep1&type=pdf|Globus GridFTP: What’s New in 2007]] 
 +    * [[http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.138.6285&rep=rep1&type=pdf|The Globus eXtensible Input/Output System (XIO)]] 
 +    * [[http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.58.4783&rep=rep1&type=pdf| Internet Congestion Control for Future High Bandwidth-Delay Product Environments]] 
 +  * UDT: 
 +    * [[http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.113.5963&rep=rep1&type=pdf| UDT: UDP-based Data Transfer for High-Speed Wide Area Networks ]] 
 +Other links: 
 +  * [[http://www.dokuwiki.org/syntax|Wiki Syntax]]
start.txt · Last modified: 2012/10/10 23:35 by webmaster